Useful links

Links to NExtSEEK, SEEK and the public data repositories.

NExtSEEK

• NExtSEEK source code on GitHub
• Installation: run your own copy
• API: the live Swagger page is at /nextseek_api/swagger/ (sign-in needed)
• Sample types and Assays: the live catalogs are at /seek/sampletypes/ and /seek/assays/

SEEK and FAIRDOM

• SEEK
• SEEK documentation
• FAIRDOMHub

Repositories

• Sequence Read Archive: https://www.ncbi.nlm.nih.gov/sra
• Gene Expression Omnibus: https://www.ncbi.nlm.nih.gov/geo/
• Zenodo: https://zenodo.org/
• ImmPort: https://www.immport.org/
• MIT.OMERO: https://omero.mit.edu/webclient/
• PRIDE: https://www.ebi.ac.uk/pride/